Resources | J.W. Jenkinson Laboratory for Evolution and Development

Resources

Listed here are datasets and resources produced by the laboratory. Some are open access; others are password-protected for use by members of the research group and collaborators.

DATABASES
HomeoDB2: a searchable, BLASTable and downloadable database of homeobox sequences http://homeodb.zoo.ox.ac.uk/

GENOMIC AND TRANSCRIPTOMIC DATASETS
(1) Insects
• Sample genome assemblies for five Lepidoptera and one Trichoptera https://databank.ora.ox.ac.uk/general/datasets/GenomeAssembliesOrangeSwi...
• Raw Illumina DNA sequence data for genomes of five Lepidoptera and one Trichoptera http://www.ncbi.nlm.nih.gov/bioproject/241175
• Short-read RNA sequence data for miRNA study in Cameraria and Pararge http://www.ncbi.nlm.nih.gov/bioproject/268522
• Short-read RNA sequence data for miRNA study in Pararge aegeria ovary http://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE72090
• mRNA transcriptome assembly for Pararge aegeria ovary GEO Accession viewer http://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE72090
• BLAST database for Lepidoptera genomes and transcriptomes http://zoo-animalia.zoo.ox.ac.uk/blastseq02/

(2) Fish
• BLAST database for Osteoglossomorpha genomes and transcriptomes http://zoo-animalia.zoo.ox.ac.uk/blastseq05

  Illumina DNA sequence for Pantodon https://www.ncbi.nlm.nih.gov/bioproject/293272

Illumina DNA sequence for Chitala, Osteoglossum, Gnathonemus https://www.ncbi.nlm.nih.gov/bioproject/347616

• Sample genome assemblies for osteoglossomorph fish https://ora.ox.ac.uk/objects/uuid:7ec56917-16b5-4637-bc88-2d6113b55633

(3) Mammals

• BLAST database for mammalian genomes , exomes and transcriptomes http://zoo-animalia.zoo.ox.ac.uk/blastseq01/

• RNAseq datasets for ectopic expression of mammalian PRD class genes https://www.ncbi.nlm.nih.gov/bioproject/318494